Glocal alignment: finding rearrangements during alignment

Michael Brudno, Sanket Malde, Alexander Poliakov, Chuong B. Do, Olivier Couronne, Inna Dubchak, and Serafim Batzoglou
Bioinformatics 19(Suppl. 1):i54–i62, 2003
http://dx.doi.org/10.1093/bioinformatics/btg1005

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