A hierarchical approach to aligning collinear regions of genomes

M. A. Roytberg, A. Y. Ogurtsov, S. A. Shabalina, and A. S. Kondrashov
Bioinformatics 18(12):1673–1680, Dec 2002
http://bioinformatics.oupjournals.org/cgi/screenpdf/18/12/1673.pdf

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